This is a list of our peer-reviewed journal publications.

 

1. Zhou, Z.H., Chiu, W. (1993) Prospects for using an IVEM with a FEG for imaging macromolecules towards atomic resolution, Ultramicroscopy, 49, 407-416.

2. Zhou, Z.H., Prasad, B.V.V., Jakana, J., Rixon, F.J. Chiu, W. (1994) Protein subunit structures in the herpes simplex virus A-capsid determined from 400 kV spot-scan electron cryomicroscopy, J. Mol. Biol., 242, 456-469. (featured on front cover)
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3. Lu, G.Y., Zhou, Z.H., Jakana, J., Cai, D.Y., Chen, S.X., Wei, X.C., Gu, X.C., and Chiu, W. (1995) Three-dimensional structure of rice dwarf virus by electron cryomicroscopy, High Tech. Let. 5, No 1, 1-4.
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4. Lamture, J.B., Zhou, Z.H., Kumar, A.S., Wensel, T.G. (1995) Luminescence properties of Terbium (III) complexes with 4-substituted dipicolinic acid analogues, Inorganic Chem., 34, No.4, 864-869.

5. Zhou, Z.H., He, J., Jakana, J., Tatman, J.D., Rixon, F.J., Chiu, W. (1995) Assembly of VP26 in herpes simplex virus-1 inferred from structures of wild-type and recombinant capsids, Nature Struct. Biol., 2, No. 11, 1026-1030.

6. Zhou, Z.H. (1996) (review) Three-dimensional reconstruction of macromolecular assemblies by electron cryomicroscopy, Chinese J. Electr. Microsc., 15(2-4), 291-300.

7. Zhou, Z.H., Hardt, S., Wang, B., Sherman, M.B., Joanita, J., Chiu, W. (1996) CTF determination of images of ice-embedded single particles using a graphics interface, J. Struct. Biol., 116, 216-222.
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8. Johnson, O., Govindan, V., Park, Y., Zhou, Z.H. (1997) Custom virtual memory policies for an image reconstruction application, Proceedings of the 4th International Conference on High Performance Computing, IEEE Computer Society Press (Los Alamitos, CA). 517-521.

9. Zhou, Z.H., Chiu, W., Haskell, K., Spears, H., Jakana, J., Rixon, F.J., Scott, L.R. (1998) Refinement of herpesvirus B-capsid structure on parallel supercomputers, Biophysical J., 74, 576-588.
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10. Zhou, Z.H., Macnab, S.J., Jakana, J., Scott, L.R., Chiu, W., Rixon, F.J. (1998) Identification of the sites of interaction between the scaffold and outer shell in HSV-1 capsids by difference electron imaging, Proc. Natl. Acad. Sci. USA, Vol. 95 (6), 2778-2783.
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11. Lu*, G., Zhou*, Z.H., Baker, M.L., Jakana, J., Cai, D., Wei, X., Chen, S., Gu, X., Chiu, W. (1998) Structure of double-shelled rice dwarf virus, J. Virology, Vol. 72 (11), 8541-8549. * Authors contributed equally.
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12. Zhang, H., Zhang, J., Yu, X., Lu, X., Zhang, Q., Jakana, J., Chen, D., Zhang, X., Zhou, Z.H. (1999) Visualization of protein-RNA interactions in cytoplasmic polyhedrosis virus, J. Virology, Vol. 73 (2), 1624-1629. (featured on front cover)
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13. Yu, X.-K., Lu, X.-Y., Zhang, H., Zhou, Z.H., Zhang, X., Zhang, J.Q.(1999) Structure of cytoplasmic polyhedrosis virus from Bombyx mori. Acta Biochemica et Biophysica Sinica, 31(5): 563-566.

14. Zhou, Z.H., Chen, D.H., Jakana, J., Rixon, F.J., Chiu, W. (1999) Visualization of tegument/capsid interactions and DNA in intact herpes simplex virus type 1 virions, J. Virology, Vol. 73 (4), 3210-3218. (featured on front cover)

15. Saad, A., Zhou, Z.H., Jakana, J., Chiu, W., Rixon, F.J. (1999) Roles of triplex and scaffolding proteins in HSV-1 capsid formation suggested by the structures of recombinant particles. J. Virology. Vol. 73(8), 6821-6830. (featured on front cover)
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16. Chen, D. H., Jiang, H., Lee, M., Liu, F., Zhou, Z.H. (1999) Three-dimensional visualization of tegument/capsid interactions in the intact human cytomegalovirus. Virology, Vol 260, 10-16. (featured on front cover)
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17. Zhou, Z.H., Dougherty, M., Jakana, J., He, J., Rixon, F.J., Chiu, W. (2000) Seeing the herpesvirus capsid at 8.5 Å. Science, Vol. 288, 877-880.
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18. Wu, L., Lo, P., Yu, X.K., Stoops, J.K, Forghani, B., Zhou, Z.H. (2000) Three-dimensional structure of human herpesvirus 8 capsid. J. Virol. Vol. 74(20), 9646-9654. (featured on front cover)
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19. Zheng, D., Xue, T., Chen, D., Zheng, M., Zhou, Z.H., Xu, W. (2000) Visualization of RHDV particles packaging genomic and subgenomic RNAs by electron cryomicroscopy. J. Chinese Electr. Microsc. Soc. Vol. 19, No. 5, 661-666.

20. Shao, C., Zhou, Z.H., Lu, G. (2001) The three-dimensional structure of the rice dwarf virus core. Science in China. Series C-Life Sciences, Vol. 44, No. 2, 192-198.

21. Zheng, D., Chen, D., Xue, T., Zheng, M., Zhou, Z.H., Xu, W. (2001) Three-dimensional structure of the rabbit hemorrhagic disease virus by electron cryomicroscopy and image reconstruction. Chinese Science Bulletin. Vol. 46, No. 12, 1005-1009. (featured on front cover)

22. Zhou, Z.H., Liao, W., Cheng, R.H., Lawson, J.E., McCarthy, D.B., Reed, L.J., Stoops, J.K. (2001) Direct Evidence for the Size and Conformational Variability of the Pyruvate Dehydrogenase Complex Revealed by 3-D Electron Microscopy: the “Breathing” Core and its Functional Relationship to Protein Dynamics. J. Biol. Chem. Vol 276, 21704-21713.
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23. He, J., Schmid, M.F., Zhou, Z.H., Rixon, F.R., Chiu, W. (2001) Finding and Using Local Symmetry in Identifying Lower Domain Movements in Hexon Subunits of the Herpes Simplex Virus Type 1 B Capsid. J. Mol. Biol., Vol. 309, 903-914. (featured on front cover)
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24. Zhou, Z.H., Baker, M.L., Jiang, W., Dougherty, M., Jakana, J., Dong, G., Lu, G., Chiu, W. (2001) Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus. Nature Struct. Biol., Vol. 8, No 10, 868-873. (featured on front cover and highlighted in Nature, vol 413, page 11,2001)

25. Chen, D.-H., Jakana, J., McNab, D., Mitchell, J., Zhou, Z.H., Dougherty, M., Chiu, W., Rixon, F.J. (2001) The pattern of tegument-capsid interaction in the herpes simplex virus type 1 virion is not influenced by the small hexon-associated protein VP26. J. Virol., Vol. 75, No. 23, 11863-11867.

26. Zhang, J., Feng, J., Liang, Y., Chen, D., Zhou, Z.H., Zhang, Q., Lu, X. (2001) Three-dimensional structure of the Chinese sacbrood bee virus. Science in China (Series C), Vol. 44 No. 4, 443-449.

27. Zhou, Z.H., McCarthy, D.B., O’Connor, C.M., Reed, L.J., Stoops, J.K. (2001) The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes. Proc. Natl. Acad. Sci. Vol. 98, No 26, 14802-14807.
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28. Chiu, W., Baker, M.L., Jiang, W., Zhou, Z.H. (2002) Deriving folds of macromolecular complexes through electron cryomicroscopy and bioinformatics. Curr. Opin. Struct. Biol., 12(2), 263-269. (featured on the front cover)
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29. Zhang, H., Yu, X.-K., Lu, X.-Y., Zhang, J.-Q., Zhou, Z.H. (2002) Molecular interactions and viral stability revealed by structural analyses of chemically-treated cypovirus capsids. Virology, 298, 45-52. (featured on front cover)
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30. Liang, Y., Ke, E.Y., Zhou, Z.H. (2002) IMIRS: a high-resolution 3D reconstruction package integrated with a relational image database. J. Struct. Biol. 137, 292-304.

31. Liang, Y., Jakana, J., Yu, X.-K., Chiu, W., Zhang, J.-Q. and Zhou, Z.H. (2002) High-resolution imaging and preliminary 3D reconstruction of cytoplasmic polyhedrosis virus. J. Chinese Electr. Microsc. Soc. Vol. 21, No. 3, 326-330.

32. Li, L., Chen, D., Zhou, Z.H., Zhang, J. and Hu, Y. (2002) Comparative three-dimensional structure analyses of Periplaneta fuliginosa densovirus, Chinese Science Bulletin, Vol. 47, No. 23, 1807-1810.

33. Xia, Q., Jakana, J., Zhang, J.-Q., Zhou, Z.H. (2003) Structural comparisons of empty and full CPV: protein-RNA interactions and implications for endogenous RNA transcription mechanisms. J. Biol. Chem., 278, 1094-1100.

34. Lo, P., Yu, X., Atanasov, I., Chandran, B., Zhou, Z.H. (2003) Three-dimensional localization of pORF65 in Kaposi’s sarcoma-associated herpesvirus capsid. J. Virol., 77, 4221-4230.
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35. Zhou, Z.H.* and Chiu, W. (2003) Determination of icosahedral virus structures by electron cryomicroscopy at subnanometer resolution. Advances in Protein Chemistry. Vol. 64, 93-124 (Ed.) Chiu, W. & Johnson, J. *corresponding author

36. Lu, B.-Y., Atanasov, I., Zhou, Z.H. and Chang J.-Y. (2003) Reversible aggregation of mouse prion protein derivatives with PrPsc-like structural properties. J. Prot. Chem., Vol. 22, No. 2, 115-126.

37. Zhou, Z.H.*, Zhang, H., Jakana, J., Lu, X.-Y., Zhang, J.-Q. (2003) Cytoplasmic polyhedrosis virus structure at 8 Å by electron cryomicroscopy: structural basis of capsid stability and mRNA processing regulation. Structure, Vol 11(6), 651-663. (featured on front cover and pre-viewed in Structure 11, 605-607, 2003) *corresponding author
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38. Gu, Y., Zhou, Z.H., McCarthy, D.B., Reed, L.J., Stoops, J.K. (2003) Protein dynamics of the pyruvate dehydrogenase complex: three-dimensional electron microscopy reveals the variable deposition of the peripheral pyruvate dehydrogenase component about the core. Proc. Natl. Acad. Sci. 100(12): 7015-20.

39. Kong, Y., Ming, D., Wu, Y., Stoops, J.S., Zhou, Z.H., Ma, J. (2003) Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model. J. Mol. Biol., Vol. 330, 129-135.
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40. Baker, M.L., Jiang, W., Bowman, B.R., Zhou, Z.H., Quiocho, F.A., Rixon, F.J., Chiu, W. (2003) Architecture of the herpes simplex virus major capsid protein derived from structural bioinformatics. J. Mol. Biol., Vol. 331, 447-456.

41. Yu, X.-K., O’Connor, C.M., Atanasov, I., Damania, B., Kedes, D.H., Zhou, Z.H. (2003) Three-dimensional structures of the A, B, and C capsids of Rhesus monkey Rhadinovirus: insights into gammaherpesvirus capsid assembly, maturation and DNA packing. J. Virol., Vol 77, 13182-13193. (feature on cover of Vol 78, No. 1)

42. Dai, W., Liang, Y., Zhou, Z.H. (2003) Web portal to an image database for high-resolution three-dimensional reconstruction. J. Struct. Biol., 144:238-45.

43. Bortz, E., Whitelegge, J.P., Jia, Q., Zhou, Z.H., Stewart, J.P., Wu, T.-T., Zhou, Z.H., Sun, R., (2003) Identification of proteins associated with murine gammaherpesvirus-68 virions. J. Virol., Vol 77, 13425-13432.

44. Chen, S., Chen, L., Zhang, Q., Deng, Y., Lin, W., Lu, X., Brannan, J., Zhou, Z.H.*, Zhang, J. (2004) Genetic, biochemical and structural characterization of a new densovirus isolated from a chronically infected Aedes albopicus C6/36 cell line. Virology, 318, 122-133. *corresponding author
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45. Cheng, L., Chen, S., Brannan, J. M., Jakana, J., Zhang, Q., Zhou, Z. H. and Zhang, J. (2004) Three-dimensional structure determination of capsid of Aedes albopictus C6/36 cell densovirus, Science China C Life Sci 47, 224-228.

46. Booth, C., Jiang, W., Baker, M.L., Zhou, Z.H., Ludtke, S.J., Chiu, W. (2004) A 9 Å Single Particle Reconstruction from CCD Captured Images on a 200 kV Electron Cryomicroscope. J. Struct. Biol. Vol. 147, 116-127 (featured on cover).
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47. Wan, Y., Chiu, W., Zhou, Z.H. (2004) Full contrast transfer function correction in 3D cryo-EM reconstruction. IEEE Proceedings of ICCCAS 2004, pp 960-964.

48. Yu, X., Shah, S., Atanasov, I., Lo, P., Liu, F., Britt, W. J. and Zhou, Z. H. (2005) Three-dimensional localization of the smallest capsid protein in the human cytomegalovirus capsid, J. Virol. 79, 1327-1332.
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49. Yu, X., Trang, P., Shah, S., Atanasov, I., Kim, Y. H., Bai, Y., Zhou, Z. H.* and Liu, F. (2005) Dissecting human cytomegalovirus gene function and capsid maturation by ribozyme targeting and electron cryomicroscopy, Proc Natl Acad Sci U S A (Track II) 102, 7103-7108. *corresponding author.

50. Fang, Q., Shah, S., Liang, Y. and Zhou, Z. H. (2005) 3D reconstruction and capsid protein characterization of grass carp reovirus, Sci China C Life Sci 48, 593-600.

51. Cong, Y., Jiang, W., Birmanns, S., Zhou, Z. H., Chiu, W. and Wriggers, W. (2005) Fast rotational matching of single-particle images, J. Struct. Biol., 144, 51-60.
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52. Cheng, L., Chen, S., Zhou, Z.H. and Zhang, J. (2007) Structure comparisons of Aedes albopictus densovirus with other Parvoviruses, Sci China C Life Sci 50, 70-74.

53. Yu, X., Qiao, M., Atanasov, I., Hu, Z., Kato, T., Liang, T.J., Zhou, Z.H. (2007) Cryo-electron microscopy and three-Dimensional reconstructions of hepatitis C virus particles. Virology, In press. doi:10.1016/j.virol.2007.05.038 (featured on cover).

54. Dai, W., Q. Jia, E. Bortz, S. Shah, J. Liu, I. Atanasov, K. A. Taylor, R. Sun and Zhou, Z. H. (2007) Unique structures of a tumor herpesvirus from electron cryomicroscopy and cryotomography, JSB In press.

55. Liu, H., Cheng, L., Zeng, S., Cai, C., Zhou, Z.H., Yang, Q. (2007) Symmetry-adapted spherical harmonics method for high-resolution 3D single particle reconstructions. J Struct Biol. 2008 Jan;161(1):64-73. Epub 2007 Oct 1.
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56. Deng, B., O'Connor, C. M., Kedes, D. H. and Zhou, Z. H. (2007) Direct visualization of a bacteriophage-like portal in the Kaposi’s sarcoma-associated herpesvirus capsid by cryo-electron tomography, J Virol. 81, 3640-3644.

57. Yu, X., Qiao, M., Atanasov, I., Hu, Z., Kato, T., Liang, T.J., Zhou, Z.H. (2007) Cryo-electron microscopy and three-Dimensional reconstructions of hepatitis C virus particles. Virology, 367, 126-134 (featured on cover).
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58. Liu, H., Cheng, L., Zeng, S., Cai, C., Zhou, Z.H., Yang, Q. (2008) Symmetry-adapted spherical harmonics method for high-resolution 3D single-particle reconstructions. J. Struct. Biol., 161, 64-73.
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59. Dai, W., Jia, Q., Bortz, E., Shah, S., Liu, J., Atanasov, I., Li, X., Taylor, K.A., Sun, R. and Zhou, Z. H. (2008) Unique structures of a tumor herpesvirus revealed by cryo-electron tomography and microscopy. J. Struct. Biol. 161, 428-438.
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60. Yu, X., Hiromasa, Y., Tsen, H., Stoops, J.K., Roche, T.E., Zhou, Z.H. (2008) Structures of the Human Pyruvate Dehydrogenase Complex Cores: a Highly Conserved Catalytic Center with Flexible N-terminal Domains. Structure, 16, 104-114.
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61. Deng, B., O'Connor, C. M., Kedes, D. H. and Zhou, Z. H. (2008) Cryo-electron tomography of Kaposi’s sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. J. Struct. Biol., 161, 419-427. (featured on cover)
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62. Yu, X., Jin, L. and Zhou, Z. H. (2008) 3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy, Nature 453, 415-419
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63. Zhou, Z. H. (2008) Towards atomic resolution single-particle cryo-electron microscopy. Curr. Opin. Struct. Biol. 18, 218-228.

64. Cheng, L., Fang, Q., Shah, S., Atanasov, I. C. and Zhou, Z. H. (2008) Subnanometer-Resolution Structures of the Grass Carp Reovirus Core and Virion, J Mol Biol doi:10.1016/j.jmb.2008.1006.1075. (featured on cover]
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65. Jiang, J., Zhang, X., Chen, Y., Wu, Y., Zhou, Z. H., Chang, Z. and Sui, S. F. (2008) Activation of DegP chaperone-protease via formation of large cage-like oligomers upon binding to substrate proteins, Proc Natl Acad Sci U S A PMID: 18697939 In press.
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